COURSE 2016

The 4th Kyoto Course on Bioinformatics for Next Generation Sequencing with Applications in Human Genetics – March 29th-31st, 2016 Preliminary Schedule

DAY1 (March 29) : MASSIVELY-PARALLEL SEQUENCING IN HUMAN GENETICS

9:00 – 9:30

Opening remarks & course overviews

Fumihiko Matsuda / Mark Lathrop

9:30 – 10:15

Practical: Basic Linux

Jean Monlong

10:15 – 10:45

Coffee break

10:45 – 12:15

Lecture: Understanding NGS data analysis workflow

Guillaume Bourque

12:15 – 13:30

Lunch

13:30 – 15:30

Practical: NGS data manipulation and variant calling (SNV, CNV)

Robert Eveleigh / Jean Monlong

15:30 – 16:00

Coffee break

16:00 – 18:00

Practical: Annotating and prioritising variants in human disease studies

Robert Eveleigh

DAY2 (March 30) : APPLICATIONS TO HUMAN GENETICS

8:30 – 9:00

Discussions with instructors

Staff

9:00 – 10:00

Lecture: Analysis of RNA-seq and epigenetic data

Guillaume Bourque

10:00 – 10:20

Coffee break

10:20 – 11:20

Lecture: QTL mapping from epigenomic data

Liming Liang

11:20 – 12:20

Lecture: Imputation

Yukinori Okada

12:20 – 13:30

Lunch

13:30 – 14:45

Lecture: Introduction to human genetics

Joseph D. Terwilliger

14:45 – 15:45

Lecture: Analysis of NGS data to identify complex and Mendelian traits

Suzanne Leal

15:45 – 16:05

Coffee break

16:05 – 18:05

Practical: NGS data to identify complex and Mendelian traits

Suzanne Leal

DAY3 (March 31) : COMPUTATIONAL AND STATISTICAL METHODS FOR NGS DATA

8:00 – 9:30

Lecture: Human population genetics

Simon Gravel

9:30 – 10:00

Coffee break

10:00 – 12:00

Practical: Human population genetics

Simon Gravel

12:00 – 13:15

Lunch

13:15 – 14:45

Lecture: Heritability analyses & disease genetics

Ryan Hernandez

14:45 – 15:15

Coffee break

15:15 – 17:45

Practical: Heritability analyses

Ryan Hernandez

17:45 – 18:00

Course wind-up

Jurg Ott